NOTES:
1-23 are wards of central Tokyo, 24-54 are in Tama area, 55-63 are islands.
This list is based on "Tokyo-to Iseki Chizu" © Tokyo Board of Education 1996, 1997.
| Municipality: Wards | Sites | Presumed | Excavated | Shell midden | Kofun | Kofun Group | |
| 1 | Chiyoda | 63 | 16 | 47 | 7 | ||
| 2 | Chuo | 16 | 2 | 14 | 2 | ||
| 3 | Minato | 127 | 22 | 105 | 15 | 9 | 1 |
| 4 | Shinjuku | 74 | 17 | 57 | 2 | ||
| 5 | Bunkyo | 73 | 26 | 47 | 12 | 6 | |
| 6 | Taito | 32 | 7 | 25 | 4 | 5 | |
| 7 | Sumida | 14 | 3 | 11 | |||
| 8 | Koto | 6 | 0 | 6 | |||
| 9 | Shinagawa | 22 | 8 | 14 | 7 | 3 | |
| 10 | Meguro | 53 | 30 | 23 | 1 | 2 | |
| 11 | Ota | 221 | 26 | 195 | 40 | 50 | 3 |
| 12 | Setagaya | 260 | 116 | 144 | 4 | 26 | 6 |
| 13 | Shibuya | 79 | 30 | 49 | 4 | 14 | 2 |
| 14 | Nakano | 94 | 64 | 30 | 1 | 2 | |
| 15 | Suginami | 156 | 121 | 35 | |||
| 16 | Toshima | 16 | 12 | 4 | 3 | 1 | |
| 17 | Kita | 48 | 13 | 35 | 5 | 8 | 4 |
| 18 | Arakawa | 8 | 3 | 5 | 2 | ||
| 19 | Itabashi | 170 | 85 | 85 | 9 | 3 | 1 |
| 20 | Nerima | 121 | 77 | 44 | |||
| 21 | Adachi | 23 | 6 | 17 | 7 | 1 | |
| 22 | Katsushika | 28 | 6 | 22 | 4 | ||
| 23 | Edogawa | 13 | 4 | 9 | 6 | ||
| Municipality: Tama | Sites | Presumed | Excavated | Shell midden | Kofun | Kofun Group | |
| 24 | Hachioji | 911 | 594 | 317 | 15 | ||
| 25 | Tachikawa | 17 | 10 | 7 | 3 | ||
| 26 | Musashino | 3 | 0 | 3 | 1 | ||
| 27 | Mitaka | 54 | 30 | 24 | 1 | ||
| 28 | Ome | 160 | 102 | 58 | 1 | ||
| 29 | Fuchu | 33 | 7 | 26 | 3 | ||
| 30 | Akishima | 46 | 28 | 18 | 3 | 1 | |
| 31 | Chofu | 62 | 20 | 42 | 2 | 4 | |
| 32 | Machida | 877 | 688 | 189 | 7 | ||
| 33 | Koganei | 23 | 9 | 14 | |||
| 34 | Kodaira | 3 | 1 | 2 | |||
| 35 | Hino | 48 | 14 | 34 | 3 | 4 | |
| 36 | Higashi-murayama | 142 | 129 | 13 | |||
| 37 | Kokubunji | 47 | 27 | 20 | |||
| 38 | Kunitachi | 28 | 10 | 18 | 4 | 2 | |
| 39 | Tanashi | 5 | 5 | 0 | |||
| 40 | Hoya | 9 | 6 | 3 | |||
| 41 | Fussa | 19 | 16 | 3 | |||
| 42 | Komae | 68 | 22 | 46 | 23 | 1 | |
| 43 | Higashi-yamato | 76 | 65 | 11 | |||
| 44 | Kiyose | 77 | 66 | 11 | |||
| 45 | Higashi-kurume | 138 | 119 | 19 | |||
| 46 | Musashi-murayama | 38 | 28 | 10 | |||
| 47 | Tama | 311 | 223 | 88 | 3 | 1 | |
| 48 | Inagi | 121 | 72 | 49 | |||
| 49 | Hamura | 10 | 6 | 4 | |||
| 50 | Akiruno | 109 | 54 | 55 | 7 | 7 | |
| 51 | Mizuho | 22 | 19 | 3 | |||
| 52 | Hinode | 20 | 9 | 11 | 1 | ||
| 53 | Hinohara | 42 | 36 | 6 | |||
| 54 | Okutama | 50 | 42 | 8 | |||
| Municipality: Islands | Sites | Presumed | Excavated | Shell midden | Kofun | Kofun Group | |
| 55 | Oshima | 34 | 25 | 9 | 2 | ||
| 56 | Toshima | 12 | 8 | 4 | |||
| 57 | Niijima | 19 | 17 | 2 | |||
| 58 | Kozushima | 11 | 11 | 0 | |||
| 59 | Miyake | 51 | 27 | 24 | |||
| 60 | Mikurajima | 4 | 1 | 3 | |||
| 61 | Hachijo | 7 | 3 | 4 | |||
| 62 | Aogashima | 0 | 0 | 0 | |||
| 63 | Ogasawara | 3 | 2 | 1 | |||
| Total | 5427 | 3245 | 2182 | 125 | 213 | 43 | |